# HG changeset patch
# User wenzelm
# Date 1358108089 -3600
# Node ID 8fc97b8da0698e5339f98a00c2d3adf080fd9938
# Parent  fa4253914e98d61b5455e3af12fd54d3403b9d37# Parent  e932198be6195c12dc95b4d3b6f9f024a58fada6
merged

diff -r fa4253914e98 -r 8fc97b8da069 Admin/Release/CHECKLIST
--- a/Admin/Release/CHECKLIST	Sun Jan 13 20:57:48 2013 +0100
+++ b/Admin/Release/CHECKLIST	Sun Jan 13 21:14:49 2013 +0100
@@ -53,16 +53,16 @@
 Packaging
 =========
 
-- hg up -r DISTNAME && isabelle makedist -r DISTNAME;
+- hg up -r DISTNAME && isabelle makedist -r DISTNAME
+
+- isabelle makedist_bundles
 
-- isabelle makedist_bundles;
+- ./makedist_library DISTNAME_linux.tar.gz
 
-- Mac OS X: hdiutil create -srcfolder DIR DMG;
+- Mac OS X: hdiutil create -srcfolder DIR DMG
 
 - Windows: cat 7zsd_All.sfx sfx.txt Isabelle.7z > Isabelle.exe
 
-- makebin -l on fast machine, based on renamed bundle with deleted heaps;
-
 
 Final release stage
 ===================
diff -r fa4253914e98 -r 8fc97b8da069 Admin/Release/makebin
--- a/Admin/Release/makebin	Sun Jan 13 20:57:48 2013 +0100
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,118 +0,0 @@
-#!/usr/bin/env bash
-#
-# makebin -- make Isabelle logic images for current platform
-
-
-## global settings
-
-TMP="/var/tmp/isabelle-makebin$$"
-
-
-## diagnostics
-
-PRG=$(basename "$0")
-
-function usage()
-{
-  echo
-  echo "Usage: $PRG [OPTIONS] ARCHIVE"
-  echo
-  echo "  Options are:"
-  echo "    -l           produce library"
-  echo
-  echo "  Precompile Isabelle for the current platform."
-  echo
-  exit 1
-}
-
-function fail()
-{
-  echo "$1" >&2
-  exit 2
-}
-
-
-## process command line
-
-# options
-
-DO_LIBRARY=""
-
-while getopts "l" OPT
-do
-  case "$OPT" in
-    l)
-      DO_LIBRARY=true
-      ;;
-    \?)
-      usage
-      ;;
-  esac
-done
-
-shift $(($OPTIND - 1))
-
-
-# args
-
-[ "$#" -gt 1 ] && usage
-
-ARCHIVE="$1"; shift
-
-
-## main
-
-[ ! -f "$ARCHIVE" ] && fail "Bad archive file $ARCHIVE"
-ARCHIVE_BASE="$(basename "$ARCHIVE")"
-ARCHIVE_DIR="$(cd $(dirname "$ARCHIVE"); echo "$PWD")"
-ARCHIVE_FULL="$ARCHIVE_DIR/$ARCHIVE_BASE"
-
-ISABELLE_NAME="$(basename "$ARCHIVE_BASE" .tar.gz)"
-ISABELLE_HOME="$TMP/$ISABELLE_NAME"
-
-
-# build logics
-
-mkdir "$TMP" || fail "Cannot create directory $TMP"
-
-cd "$TMP"
-tar xzf "$ARCHIVE_FULL"
-cd "$ISABELLE_NAME"
-
-perl -pi \
-  -e 's:^ISABELLE_USEDIR_OPTIONS=.*$:ISABELLE_USEDIR_OPTIONS="-M 1":;' \
-  etc/settings
-
-if [ -n "$DO_LIBRARY" ]; then
-  perl -pi -e 's:^ISABELLE_USEDIR_OPTIONS=.*$:ISABELLE_USEDIR_OPTIONS="-M 1 -i true -d pdf -V outline=/proof,/ML":;' \
-    etc/settings
-fi
-
-ISABELLE_HOME_USER=$(./bin/isabelle getenv -b ISABELLE_HOME_USER)
-
-COMPILER=$(./bin/isabelle getenv -b ML_IDENTIFIER)
-PLATFORM=$(./bin/isabelle getenv -b ML_PLATFORM)
-
-if [ -n "$DO_LIBRARY" ]; then
-  ./build -bait -m all
-else
-  ./build -b HOL
-fi
-
-
-# prepare result
-
-cd "$TMP"
-
-chmod -R g=o "$TMP"
-chgrp -R isabelle "$TMP"
-
-if [ -n "$DO_LIBRARY" ]; then
-  tar -c -z -f "$ARCHIVE_DIR/${ISABELLE_NAME}_library.tar.gz" "$ISABELLE_NAME/browser_info"
-else
-  tar -c -z -f "$ARCHIVE_DIR/${ISABELLE_NAME}_heaps_${PLATFORM}.tar.gz" "$ISABELLE_NAME/heaps"
-fi
-
-
-# clean up
-rm -rf "$TMP"
diff -r fa4253914e98 -r 8fc97b8da069 Admin/Release/makedist_library
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Admin/Release/makedist_library	Sun Jan 13 21:14:49 2013 +0100
@@ -0,0 +1,96 @@
+#!/usr/bin/env bash
+#
+# makedist_library -- build Isabelle HTML library from platform bundle
+
+## diagnostics
+
+PRG=$(basename "$0")
+
+function usage()
+{
+  echo
+  echo "Usage: $PRG [OPTIONS] ARCHIVE"
+  echo
+  echo "  Options are:"
+  echo "    -j INT       maximum number of parallel jobs (default 1)"
+  echo
+  echo "  Build Isabelle HTML library from platform bundle."
+  echo
+  exit 1
+}
+
+function fail()
+{
+  echo "$1" >&2
+  exit 2
+}
+
+
+## process command line
+
+# options
+
+JOBS=""
+
+while getopts "j:" OPT
+do
+  case "$OPT" in
+    j)
+      JOBS="-j $OPTARG"
+      ;;
+    \?)
+      usage
+      ;;
+  esac
+done
+
+shift $(($OPTIND - 1))
+
+
+# args
+
+[ "$#" -ne 1 ] && usage
+
+ARCHIVE="$1"; shift
+
+[ ! -f "$ARCHIVE" ] && fail "Bad archive file $ARCHIVE"
+ARCHIVE_BASE="$(basename "$ARCHIVE")"
+ARCHIVE_DIR="$(cd "$(dirname "$ARCHIVE")"; echo "$PWD")"
+ARCHIVE_FULL="$ARCHIVE_DIR/$ARCHIVE_BASE"
+
+
+## main
+
+export COPYFILE_DISABLE=true
+
+TMP="/var/tmp/isabelle-makedist$$"
+mkdir "$TMP" || fail "Cannot create directory: \"$TMP\""
+
+cd "$TMP"
+tar -x -z -f "$ARCHIVE_FULL"
+
+cd *
+ISABELLE_NAME="$(basename "$PWD")"
+
+echo "Z3_NON_COMMERCIAL=yes" >> etc/settings
+echo "ISABELLE_FULL_TEST=true" >> etc/settings
+
+echo -n > src/Doc/ROOT
+
+env ISABELLE_IDENTIFIER="${ISABELLE_NAME}-build" \
+  ./bin/isabelle build $JOBS -s -c -a -o browser_info \
+    -o "document=pdf" -o "document_variants=document:outline=/proof,/ML"
+RC="$?"
+
+cd ..
+
+if [ "$RC" = 0 ]; then
+  chmod -R g=o "$ISABELLE_NAME"
+  tar -c -z -f "$ARCHIVE_DIR/${ISABELLE_NAME}_library.tar.gz" "$ISABELLE_NAME/browser_info"
+fi
+
+# clean up
+cd /tmp
+rm -rf "$TMP"
+
+exit "$RC"
diff -r fa4253914e98 -r 8fc97b8da069 Admin/java/build
--- a/Admin/java/build	Sun Jan 13 20:57:48 2013 +0100
+++ b/Admin/java/build	Sun Jan 13 21:14:49 2013 +0100
@@ -91,6 +91,8 @@
 
 # content
 
+export COPYFILE_DISABLE=true
+
 mkdir "$DIR/x86-linux" "$DIR/x86_64-linux" "$DIR/x86_64-darwin" "$DIR/x86-cygwin"
 
 tar -C "$DIR/x86-linux" -xf "$ARCHIVE_LINUX32"
diff -r fa4253914e98 -r 8fc97b8da069 Admin/lib/Tools/makedist
--- a/Admin/lib/Tools/makedist	Sun Jan 13 20:57:48 2013 +0100
+++ b/Admin/lib/Tools/makedist	Sun Jan 13 21:14:49 2013 +0100
@@ -196,7 +196,7 @@
 chmod -R g=o "$DISTNAME"
 
 echo "$DISTBASE/$DISTNAME.tar.gz"
-tar -czf "$DISTNAME.tar.gz" "$DISTNAME"
+env COPYFILE_DISABLE=true tar -c -z -f "$DISTNAME.tar.gz" "$DISTNAME"
 
 
 # cleanup dist
diff -r fa4253914e98 -r 8fc97b8da069 Admin/lib/Tools/makedist_bundles
--- a/Admin/lib/Tools/makedist_bundles	Sun Jan 13 20:57:48 2013 +0100
+++ b/Admin/lib/Tools/makedist_bundles	Sun Jan 13 21:14:49 2013 +0100
@@ -40,6 +40,8 @@
 
 ## main
 
+export COPYFILE_DISABLE=true
+
 for PLATFORM_FAMILY in linux macos windows
 do
 
diff -r fa4253914e98 -r 8fc97b8da069 src/Pure/PIDE/document.ML
--- a/src/Pure/PIDE/document.ML	Sun Jan 13 20:57:48 2013 +0100
+++ b/src/Pure/PIDE/document.ML	Sun Jan 13 21:14:49 2013 +0100
@@ -71,7 +71,7 @@
   perspective: perspective,  (*visible commands, last*)
   entries: (exec_id * exec) option Entries.T * bool,  (*command entries with excecutions, stable*)
   result: exec option}  (*result of last execution*)
-and version = Version of node Graph.T  (*development graph wrt. static imports*)
+and version = Version of node String_Graph.T  (*development graph wrt. static imports*)
 with
 
 fun make_node (header, perspective, entries, result) =
@@ -134,9 +134,10 @@
 fun set_result result =
   map_node (fn (header, perspective, entries, _) => (header, perspective, entries, result));
 
-fun get_node nodes name = Graph.get_node nodes name handle Graph.UNDEF _ => empty_node;
-fun default_node name = Graph.default_node (name, empty_node);
-fun update_node name f = default_node name #> Graph.map_node name f;
+fun get_node nodes name = String_Graph.get_node nodes name
+  handle String_Graph.UNDEF _ => empty_node;
+fun default_node name = String_Graph.default_node (name, empty_node);
+fun update_node name f = default_node name #> String_Graph.map_node name f;
 
 
 (* node edits and associated executions *)
@@ -182,7 +183,7 @@
 
 (* version operations *)
 
-val empty_version = Version Graph.empty;
+val empty_version = Version String_Graph.empty;
 
 fun nodes_of (Version nodes) = nodes;
 val node_of = get_node o nodes_of;
@@ -204,12 +205,12 @@
             |> default_node name
             |> fold default_node imports;
           val nodes2 = nodes1
-            |> Graph.Keys.fold
-                (fn dep => Graph.del_edge (dep, name)) (Graph.imm_preds nodes1 name);
+            |> String_Graph.Keys.fold
+                (fn dep => String_Graph.del_edge (dep, name)) (String_Graph.imm_preds nodes1 name);
           val (nodes3, errors2) =
-            (Graph.add_deps_acyclic (name, imports) nodes2, errors1)
-              handle Graph.CYCLES cs => (nodes2, errors1 @ map cycle_msg cs);
-        in Graph.map_node name (set_header (master, header, errors2)) nodes3 end
+            (String_Graph.add_deps_acyclic (name, imports) nodes2, errors1)
+              handle String_Graph.CYCLES cs => (nodes2, errors1 @ map cycle_msg cs);
+        in String_Graph.map_node name (set_header (master, header, errors2)) nodes3 end
     | Perspective perspective => update_node name (set_perspective perspective) nodes);
 
 fun put_node (name, node) (Version nodes) =
@@ -294,7 +295,7 @@
     val commands' =
       (versions', Inttab.empty) |->
         Inttab.fold (fn (_, version) => nodes_of version |>
-          Graph.fold (fn (_, (node, _)) => node |>
+          String_Graph.fold (fn (_, (node, _)) => node |>
             iterate_entries (fn ((_, id), _) =>
               SOME o Inttab.insert (K true) (id, the_command state id))));
   in (versions', commands', execution) end);
@@ -339,7 +340,7 @@
         {name = "execution", group = SOME group, deps = [], pri = ~2, interrupts = true}
         (fn () =>
          (OS.Process.sleep (seconds 0.02);
-          nodes_of (the_version state version_id) |> Graph.schedule
+          nodes_of (the_version state version_id) |> String_Graph.schedule
             (fn deps => fn (name, node) =>
               if not (visible_node node) andalso finished_theory node then
                 Future.value ()
@@ -366,13 +367,13 @@
 fun make_required nodes =
   let
     val all_visible =
-      Graph.fold (fn (a, (node, _)) => visible_node node ? cons a) nodes []
-      |> Graph.all_preds nodes
+      String_Graph.fold (fn (a, (node, _)) => visible_node node ? cons a) nodes []
+      |> String_Graph.all_preds nodes
       |> map (rpair ()) |> Symtab.make;
 
     val required =
       Symtab.fold (fn (a, ()) =>
-        exists (Symtab.defined all_visible) (Graph.immediate_succs nodes a) ?
+        exists (Symtab.defined all_visible) (String_Graph.immediate_succs nodes a) ?
           Symtab.update (a, ())) all_visible Symtab.empty;
   in Symtab.defined required end;
 
@@ -476,7 +477,7 @@
 
     val _ = timeit "Document.terminate_execution" (fn () => terminate_execution state);
     val updated = timeit "Document.update" (fn () =>
-      nodes |> Graph.schedule
+      nodes |> String_Graph.schedule
         (fn deps => fn (name, node) =>
           (singleton o Future.forks)
             {name = "Document.update", group = NONE,
diff -r fa4253914e98 -r 8fc97b8da069 src/Pure/Thy/thy_info.ML
--- a/src/Pure/Thy/thy_info.ML	Sun Jan 13 20:57:48 2013 +0100
+++ b/src/Pure/Thy/thy_info.ML	Sun Jan 13 21:14:49 2013 +0100
@@ -55,11 +55,11 @@
 
 (* derived graph operations *)
 
-fun add_deps name parents G = Graph.add_deps_acyclic (name, parents) G
-  handle Graph.CYCLES namess => error (cat_lines (map cycle_msg namess));
+fun add_deps name parents G = String_Graph.add_deps_acyclic (name, parents) G
+  handle String_Graph.CYCLES namess => error (cat_lines (map cycle_msg namess));
 
 fun new_entry name parents entry =
-  Graph.new_node (name, entry) #> add_deps name parents;
+  String_Graph.new_node (name, entry) #> add_deps name parents;
 
 
 (* thy database *)
@@ -74,7 +74,8 @@
 fun base_name s = Path.implode (Path.base (Path.explode s));
 
 local
-  val database = Unsynchronized.ref (Graph.empty: (deps option * theory option) Graph.T);
+  val database =
+    Unsynchronized.ref (String_Graph.empty: (deps option * theory option) String_Graph.T);
 in
   fun get_thys () = ! database;
   fun change_thys f = NAMED_CRITICAL "Thy_Info" (fn () => Unsynchronized.change database f);
@@ -85,13 +86,13 @@
 
 fun thy_graph f x = f (get_thys ()) x;
 
-fun get_names () = Graph.topological_order (get_thys ());
+fun get_names () = String_Graph.topological_order (get_thys ());
 
 
 (* access thy *)
 
 fun lookup_thy name =
-  SOME (thy_graph Graph.get_node name) handle Graph.UNDEF _ => NONE;
+  SOME (thy_graph String_Graph.get_node name) handle String_Graph.UNDEF _ => NONE;
 
 val known_thy = is_some o lookup_thy;
 
@@ -139,10 +140,10 @@
   if is_finished name then error (loader_msg "attempt to change finished theory" [name])
   else
     let
-      val succs = thy_graph Graph.all_succs [name];
+      val succs = thy_graph String_Graph.all_succs [name];
       val _ = Output.urgent_message (loader_msg "removing" succs);
       val _ = List.app (perform Remove) succs;
-      val _ = change_thys (fold Graph.del_node succs);
+      val _ = change_thys (fold String_Graph.del_node succs);
     in () end);
 
 fun kill_thy name = NAMED_CRITICAL "Thy_Info" (fn () =>
@@ -179,13 +180,13 @@
   (Thm.join_theory_proofs thy; Future.join present; commit (); thy);
 
 val schedule_seq =
-  Graph.schedule (fn deps => fn (_, task) =>
+  String_Graph.schedule (fn deps => fn (_, task) =>
     (case task of
       Task (parents, body) => finish_thy (body (task_parents deps parents))
     | Finished thy => thy)) #> ignore;
 
 val schedule_futures = uninterruptible (fn _ =>
-  Graph.schedule (fn deps => fn (name, task) =>
+  String_Graph.schedule (fn deps => fn (name, task) =>
     (case task of
       Task (parents, body) =>
         (singleton o Future.forks)
@@ -265,7 +266,7 @@
     val path = Path.expand (Path.explode str);
     val name = Path.implode (Path.base path);
   in
-    (case try (Graph.get_node tasks) name of
+    (case try (String_Graph.get_node tasks) name of
       SOME task => (task_finished task, tasks)
     | NONE =>
         let
@@ -305,7 +306,7 @@
 (* use_thy *)
 
 fun use_thys_wrt dir arg =
-  schedule_tasks (snd (require_thys [] dir arg Graph.empty));
+  schedule_tasks (snd (require_thys [] dir arg String_Graph.empty));
 
 val use_thys = use_thys_wrt Path.current;
 val use_thy = use_thys o single;
@@ -340,6 +341,6 @@
 
 (* finish all theories *)
 
-fun finish () = change_thys (Graph.map (fn _ => fn (_, entry) => (NONE, entry)));
+fun finish () = change_thys (String_Graph.map (fn _ => fn (_, entry) => (NONE, entry)));
 
 end;