src/Pure/Tools/build.scala

             // write database
             {
               val database = store.output_dir + store.database(name)
               database.file.delete
 
+              val build_log =
+                Build_Log.Log_File(name, process_result.out_lines).
+                  parse_session_info(
+                    command_timings = true,
+                    theory_timings = true,
+                    ml_statistics = true,
+                    task_statistics = true)
+
               using(SQLite.open_database(database))(db =>
                 store.write_session_info(db, name,
                   build_log =
-                    Build_Log.Log_File(name, process_result.out_lines).
-                      parse_session_info(
-                        command_timings = true,
-                        theory_timings = true,
-                        ml_statistics = true,
-                        task_statistics = true),
+                    if (process_result.timeout) build_log.error("Timeout") else build_log,
                   build =
                     Session_Info(sources_stamp(deps, name), input_heaps, heap_stamp,
                       process_result.rc)))
             }