src/Pure/Tools/build_job.scala

clarified signature: allow to provide session_heaps by different means, e.g. from tmp directory or alternative session structure;

/*  Title:      Pure/Tools/build_job.scala
    Author:     Makarius

Build job running prover process, with rudimentary PIDE session.
*/

package isabelle


import scala.collection.mutable
import scala.util.matching.Regex


trait Build_Job {
  def job_name: String
  def node_info: Build_Job.Node_Info
  def start(): Unit = ()
  def terminate(): Unit = ()
  def is_finished: Boolean = false
  def finish: (Process_Result, SHA1.Shasum) = (Process_Result.undefined, SHA1.no_shasum)
  def make_abstract: Build_Job.Abstract = Build_Job.Abstract(job_name, node_info)
}

object Build_Job {
  object Node_Info { def none: Node_Info = Node_Info("", None) }
  sealed case class Node_Info(hostname: String, numa_node: Option[Int])

  sealed case class Result(node_info: Node_Info, process_result: Process_Result) {
    def ok: Boolean = process_result.ok
  }

  sealed case class Abstract(
    override val job_name: String,
    override val node_info: Node_Info
  ) extends Build_Job {
    override def make_abstract: Abstract = this
  }


  /* build session */

  class Build_Session(
    progress: Progress,
    verbose: Boolean,
    session_background: Sessions.Background,
    session_heaps: List[Path],
    store: Sessions.Store,
    do_store: Boolean,
    resources: Resources,
    session_setup: (String, Session) => Unit,
    sources_shasum: SHA1.Shasum,
    input_heaps: SHA1.Shasum,
    override val node_info: Node_Info
  ) extends Build_Job {
    def session_name: String = session_background.session_name
    def job_name: String = session_name

    val info: Sessions.Info = session_background.sessions_structure(session_name)
    val options: Options = NUMA.policy_options(info.options, node_info.numa_node)

    val session_sources: Sessions.Sources =
      Sessions.Sources.load(session_background.base, cache = store.cache.compress)

    private lazy val future_result: Future[Process_Result] =
      Future.thread("build", uninterruptible = true) {
        val env =
          Isabelle_System.settings(
            List("ISABELLE_ML_DEBUGGER" -> options.bool("ML_debugger").toString))

        val use_prelude = if (session_heaps.isEmpty) Thy_Header.ml_roots.map(_._1) else Nil

        val eval_store =
          if (do_store) {
            (if (info.theories.nonEmpty) List("ML_Heap.share_common_data ()") else Nil) :::
            List("ML_Heap.save_child " +
              ML_Syntax.print_string_bytes(File.platform_path(store.output_heap(session_name))))
          }
          else Nil

        def session_blobs(node_name: Document.Node.Name): List[(Command.Blob, Document.Blobs.Item)] =
          session_background.base.theory_load_commands.get(node_name.theory) match {
            case None => Nil
            case Some(spans) =>
              val syntax = session_background.base.theory_syntax(node_name)
              val master_dir = Path.explode(node_name.master_dir)
              for (span <- spans; file <- span.loaded_files(syntax).files)
                yield {
                  val src_path = Path.explode(file)
                  val blob_name = Document.Node.Name(File.symbolic_path(master_dir + src_path))

                  val bytes = session_sources(blob_name.node).bytes
                  val text = bytes.text
                  val chunk = Symbol.Text_Chunk(text)

                  Command.Blob(blob_name, src_path, Some((SHA1.digest(bytes), chunk))) ->
                    Document.Blobs.Item(bytes, text, chunk, changed = false)
                }
          }

        val session =
          new Session(options, resources) {
            override val cache: Term.Cache = store.cache

            override def build_blobs_info(node_name: Document.Node.Name): Command.Blobs_Info =
              Command.Blobs_Info.make(session_blobs(node_name))

            override def build_blobs(node_name: Document.Node.Name): Document.Blobs =
              Document.Blobs.make(session_blobs(node_name))
          }

        object Build_Session_Errors {
          private val promise: Promise[List[String]] = Future.promise

          def result: Exn.Result[List[String]] = promise.join_result
          def cancel(): Unit = promise.cancel()
          def apply(errs: List[String]): Unit = {
            try { promise.fulfill(errs) }
            catch { case _: IllegalStateException => }
          }
        }

        val export_consumer =
          Export.consumer(store.open_database(session_name, output = true), store.cache,
            progress = progress)

        val stdout = new StringBuilder(1000)
        val stderr = new StringBuilder(1000)
        val command_timings = new mutable.ListBuffer[Properties.T]
        val theory_timings = new mutable.ListBuffer[Properties.T]
        val session_timings = new mutable.ListBuffer[Properties.T]
        val runtime_statistics = new mutable.ListBuffer[Properties.T]
        val task_statistics = new mutable.ListBuffer[Properties.T]

        def fun(
          name: String,
          acc: mutable.ListBuffer[Properties.T],
          unapply: Properties.T => Option[Properties.T]
        ): (String, Session.Protocol_Function) = {
          name -> ((msg: Prover.Protocol_Output) =>
            unapply(msg.properties) match {
              case Some(props) => acc += props; true
              case _ => false
            })
        }

        session.init_protocol_handler(new Session.Protocol_Handler {
            override def exit(): Unit = Build_Session_Errors.cancel()

            private def build_session_finished(msg: Prover.Protocol_Output): Boolean = {
              val (rc, errors) =
                try {
                  val (rc, errs) = {
                    import XML.Decode._
                    pair(int, list(x => x))(Symbol.decode_yxml(msg.text))
                  }
                  val errors =
                    for (err <- errs) yield {
                      val prt = Protocol_Message.expose_no_reports(err)
                      Pretty.string_of(prt, metric = Symbol.Metric)
                    }
                  (rc, errors)
                }
                catch { case ERROR(err) => (Process_Result.RC.failure, List(err)) }

              session.protocol_command("Prover.stop", rc.toString)
              Build_Session_Errors(errors)
              true
            }

            private def loading_theory(msg: Prover.Protocol_Output): Boolean =
              msg.properties match {
                case Markup.Loading_Theory(Markup.Name(name)) =>
                  progress.theory(Progress.Theory(name, session = session_name))
                  false
                case _ => false
              }

            private def export_(msg: Prover.Protocol_Output): Boolean =
              msg.properties match {
                case Protocol.Export(args) =>
                  export_consumer.make_entry(session_name, args, msg.chunk)
                  true
                case _ => false
              }

            override val functions: Session.Protocol_Functions =
              List(
                Markup.Build_Session_Finished.name -> build_session_finished,
                Markup.Loading_Theory.name -> loading_theory,
                Markup.EXPORT -> export_,
                fun(Markup.Theory_Timing.name, theory_timings, Markup.Theory_Timing.unapply),
                fun(Markup.Session_Timing.name, session_timings, Markup.Session_Timing.unapply),
                fun(Markup.Task_Statistics.name, task_statistics, Markup.Task_Statistics.unapply))
          })

        session.command_timings += Session.Consumer("command_timings") {
          case Session.Command_Timing(props) =>
            for {
              elapsed <- Markup.Elapsed.unapply(props)
              elapsed_time = Time.seconds(elapsed)
              if elapsed_time.is_relevant && elapsed_time >= options.seconds("command_timing_threshold")
            } command_timings += props.filter(Markup.command_timing_property)
        }

        session.runtime_statistics += Session.Consumer("ML_statistics") {
          case Session.Runtime_Statistics(props) => runtime_statistics += props
        }

        session.finished_theories += Session.Consumer[Document.Snapshot]("finished_theories") {
          case snapshot =>
            if (!progress.stopped) {
              def export_(name: String, xml: XML.Body, compress: Boolean = true): Unit = {
                if (!progress.stopped) {
                  val theory_name = snapshot.node_name.theory
                  val args =
                    Protocol.Export.Args(theory_name = theory_name, name = name, compress = compress)
                  val body = Bytes(Symbol.encode(YXML.string_of_body(xml)))
                  export_consumer.make_entry(session_name, args, body)
                }
              }
              def export_text(name: String, text: String, compress: Boolean = true): Unit =
                export_(name, List(XML.Text(text)), compress = compress)

              for (command <- snapshot.snippet_command) {
                export_text(Export.DOCUMENT_ID, command.id.toString, compress = false)
              }

              export_text(Export.FILES,
                cat_lines(snapshot.node_files.map(name => File.symbolic_path(name.path))),
                compress = false)

              for ((blob_name, i) <- snapshot.node_files.tail.zipWithIndex) {
                val xml = snapshot.switch(blob_name).xml_markup()
                export_(Export.MARKUP + (i + 1), xml)
              }
              export_(Export.MARKUP, snapshot.xml_markup())
              export_(Export.MESSAGES, snapshot.messages.map(_._1))
            }
        }

        session.all_messages += Session.Consumer[Any]("build_session_output") {
          case msg: Prover.Output =>
            val message = msg.message
            if (msg.is_system) resources.log(Protocol.message_text(message))

            if (msg.is_stdout) {
              stdout ++= Symbol.encode(XML.content(message))
            }
            else if (msg.is_stderr) {
              stderr ++= Symbol.encode(XML.content(message))
            }
            else if (msg.is_exit) {
              val err =
                "Prover terminated" +
                  (msg.properties match {
                    case Markup.Process_Result(result) => ": " + result.print_rc
                    case _ => ""
                  })
              Build_Session_Errors(List(err))
            }
          case _ =>
        }

        session_setup(session_name, session)

        val eval_main = Command_Line.ML_tool("Isabelle_Process.init_build ()" :: eval_store)

        val process = {
          Isabelle_Process.start(options, session, session_background, session_heaps,
            use_prelude = use_prelude, eval_main = eval_main, cwd = info.dir.file, env = env)
        }

        val build_errors =
          Isabelle_Thread.interrupt_handler(_ => process.terminate()) {
            Exn.capture { process.await_startup() } match {
              case Exn.Res(_) =>
                val resources_yxml = resources.init_session_yxml
                val encode_options: XML.Encode.T[Options] =
                  options => session.prover_options(options).encode
                val args_yxml =
                  YXML.string_of_body(
                    {
                      import XML.Encode._
                      pair(string, list(pair(encode_options, list(pair(string, properties)))))(
                        (session_name, info.theories))
                    })
                session.protocol_command("build_session", resources_yxml, args_yxml)
                Build_Session_Errors.result
              case Exn.Exn(exn) => Exn.Res(List(Exn.message(exn)))
            }
          }

        val process_result =
          Isabelle_Thread.interrupt_handler(_ => process.terminate()) { process.await_shutdown() }

        session.stop()

        val export_errors =
          export_consumer.shutdown(close = true).map(Output.error_message_text)

        val (document_output, document_errors) =
          try {
            if (build_errors.isInstanceOf[Exn.Res[_]] && process_result.ok && info.documents.nonEmpty) {
              using(Export.open_database_context(store)) { database_context =>
                val documents =
                  using(database_context.open_session(session_background)) {
                    session_context =>
                      Document_Build.build_documents(
                        Document_Build.context(session_context, progress = progress),
                        output_sources = info.document_output,
                        output_pdf = info.document_output)
                  }
                using(database_context.open_database(session_name, output = true))(session_database =>
                  documents.foreach(_.write(session_database.db, session_name)))
                (documents.flatMap(_.log_lines), Nil)
              }
            }
            else (Nil, Nil)
          }
          catch {
            case exn: Document_Build.Build_Error => (exn.log_lines, exn.log_errors)
            case Exn.Interrupt.ERROR(msg) => (Nil, List(msg))
          }

        val result = {
          val theory_timing =
            theory_timings.iterator.flatMap(
              {
                case props @ Markup.Name(name) => Some(name -> props)
                case _ => None
              }).toMap
          val used_theory_timings =
            for { (name, _) <- session_background.base.used_theories }
              yield theory_timing.getOrElse(name.theory, Markup.Name(name.theory))

          val more_output =
            Library.trim_line(stdout.toString) ::
              command_timings.toList.map(Protocol.Command_Timing_Marker.apply) :::
              used_theory_timings.map(Protocol.Theory_Timing_Marker.apply) :::
              session_timings.toList.map(Protocol.Session_Timing_Marker.apply) :::
              runtime_statistics.toList.map(Protocol.ML_Statistics_Marker.apply) :::
              task_statistics.toList.map(Protocol.Task_Statistics_Marker.apply) :::
              document_output

          process_result.output(more_output)
            .error(Library.trim_line(stderr.toString))
            .errors_rc(export_errors ::: document_errors)
        }

        build_errors match {
          case Exn.Res(build_errs) =>
            val errs = build_errs ::: document_errors
            if (errs.nonEmpty) {
              result.error_rc.output(
                errs.flatMap(s => split_lines(Output.error_message_text(s))) :::
                  errs.map(Protocol.Error_Message_Marker.apply))
            }
            else if (progress.stopped && result.ok) result.copy(rc = Process_Result.RC.interrupt)
            else result
          case Exn.Exn(Exn.Interrupt()) =>
            if (result.ok) result.copy(rc = Process_Result.RC.interrupt)
            else result
          case Exn.Exn(exn) => throw exn
        }
      }

    override def start(): Unit = future_result
    override def terminate(): Unit = future_result.cancel()
    override def is_finished: Boolean = future_result.is_finished

    private val timeout_request: Option[Event_Timer.Request] = {
      if (info.timeout_ignored) None
      else Some(Event_Timer.request(Time.now() + info.timeout) { terminate() })
    }

    override lazy val finish: (Process_Result, SHA1.Shasum) = {
      val process_result = {
        val result = future_result.join

        val was_timeout =
          timeout_request match {
            case None => false
            case Some(request) => !request.cancel()
          }

        if (result.ok) result
        else if (was_timeout) result.error(Output.error_message_text("Timeout")).timeout_rc
        else if (result.interrupted) result.error(Output.error_message_text("Interrupt"))
        else result
      }

      val output_heap =
        if (process_result.ok && do_store && store.output_heap(session_name).is_file) {
          SHA1.shasum(ML_Heap.write_digest(store.output_heap(session_name)), session_name)
        }
        else SHA1.no_shasum

      val log_lines = process_result.out_lines.filterNot(Protocol_Message.Marker.test)

      val build_log =
        Build_Log.Log_File(session_name, process_result.out_lines).
          parse_session_info(
            command_timings = true,
            theory_timings = true,
            ml_statistics = true,
            task_statistics = true)

      // write log file
      if (process_result.ok) {
        File.write_gzip(store.output_log_gz(session_name), terminate_lines(log_lines))
      }
      else File.write(store.output_log(session_name), terminate_lines(log_lines))

      // write database
      using(store.open_database(session_name, output = true))(db =>
        store.write_session_info(db, session_name, session_sources,
          build_log =
            if (process_result.timeout) build_log.error("Timeout") else build_log,
          build =
            Sessions.Build_Info(sources_shasum, input_heaps, output_heap,
              process_result.rc, UUID.random().toString)))

      // messages
      process_result.err_lines.foreach(progress.echo)

      if (process_result.ok) {
        if (verbose) {
          val props = build_log.session_timing
          val threads = Markup.Session_Timing.Threads.unapply(props) getOrElse 1
          val timing = Markup.Timing_Properties.get(props)
          progress.echo(
            "Timing " + session_name + " (" + threads + " threads, " + timing.message_factor + ")")
        }
        progress.echo(
          "Finished " + session_name + " (" + process_result.timing.message_resources + ")")
      }
      else {
        progress.echo(
          session_name + " FAILED (see also \"isabelle log -H Error " + session_name + "\")")
        if (!process_result.interrupted) {
          val tail = info.options.int("process_output_tail")
          val suffix = if (tail == 0) log_lines else log_lines.drop(log_lines.length - tail max 0)
          val prefix = if (log_lines.length == suffix.length) Nil else List("...")
          progress.echo(Library.trim_line(cat_lines(prefix ::: suffix)))
        }
      }

      (process_result.copy(out_lines = log_lines), output_heap)
    }
  }


  /* theory markup/messages from session database */

  def read_theory(
    theory_context: Export.Theory_Context,
    unicode_symbols: Boolean = false
  ): Option[Document.Snapshot] = {
    def decode_bytes(bytes: Bytes): String =
      Symbol.output(unicode_symbols, UTF8.decode_permissive(bytes))

    def read(name: String): Export.Entry = theory_context(name, permissive = true)

    def read_xml(name: String): XML.Body =
      YXML.parse_body(decode_bytes(read(name).bytes), cache = theory_context.cache)

    def read_source_file(name: String): Sessions.Source_File =
      theory_context.session_context.source_file(name)

    for {
      id <- theory_context.document_id()
      (thy_file, blobs_files) <- theory_context.files(permissive = true)
    }
    yield {
      val master_dir =
        Path.explode(Url.strip_base_name(thy_file).getOrElse(
          error("Cannot determine theory master directory: " + quote(thy_file))))

      val blobs =
        blobs_files.map { name =>
          val path = Path.explode(name)
          val src_path = File.relative_path(master_dir, path).getOrElse(path)

          val file = read_source_file(name)
          val bytes = file.bytes
          val text = decode_bytes(bytes)
          val chunk = Symbol.Text_Chunk(text)

          Command.Blob(Document.Node.Name(name), src_path, Some((file.digest, chunk))) ->
            Document.Blobs.Item(bytes, text, chunk, changed = false)
        }

      val thy_source = decode_bytes(read_source_file(thy_file).bytes)
      val thy_xml = read_xml(Export.MARKUP)
      val blobs_xml =
        for (i <- (1 to blobs.length).toList)
          yield read_xml(Export.MARKUP + i)

      val markups_index = Command.Markup_Index.make(blobs.map(_._1))
      val markups =
        Command.Markups.make(
          for ((index, xml) <- markups_index.zip(thy_xml :: blobs_xml))
          yield index -> Markup_Tree.from_XML(xml))

      val results =
        Command.Results.make(
          for (elem @ XML.Elem(Markup(_, Markup.Serial(i)), _) <- read_xml(Export.MESSAGES))
            yield i -> elem)

      val command =
        Command.unparsed(thy_source, theory = true, id = id,
          node_name = Document.Node.Name(thy_file, theory = theory_context.theory),
          blobs_info = Command.Blobs_Info.make(blobs),
          markups = markups, results = results)

      val doc_blobs = Document.Blobs.make(blobs)

      Document.State.init.snippet(command, doc_blobs)
    }
  }


  /* print messages */

  def print_log(
    options: Options,
    sessions: List[String],
    theories: List[String] = Nil,
    message_head: List[Regex] = Nil,
    message_body: List[Regex] = Nil,
    verbose: Boolean = false,
    progress: Progress = new Progress,
    margin: Double = Pretty.default_margin,
    breakgain: Double = Pretty.default_breakgain,
    metric: Pretty.Metric = Symbol.Metric,
    unicode_symbols: Boolean = false
  ): Unit = {
    val store = Sessions.store(options)
    val session = new Session(options, Resources.bootstrap)

    def check(filter: List[Regex], make_string: => String): Boolean =
      filter.isEmpty || {
        val s = Output.clean_yxml(make_string)
        filter.forall(r => r.findFirstIn(Output.clean_yxml(s)).nonEmpty)
      }

    def print(session_name: String): Unit = {
      using(Export.open_session_context0(store, session_name)) { session_context =>
        val result =
          for {
            db <- session_context.session_db()
            theories = store.read_theories(db, session_name)
            errors = store.read_errors(db, session_name)
            info <- store.read_build(db, session_name)
          } yield (theories, errors, info.return_code)
        result match {
          case None => store.error_database(session_name)
          case Some((used_theories, errors, rc)) =>
            theories.filterNot(used_theories.toSet) match {
              case Nil =>
              case bad => error("Unknown theories " + commas_quote(bad))
            }
            val print_theories =
              if (theories.isEmpty) used_theories else used_theories.filter(theories.toSet)

            for (thy <- print_theories) {
              val thy_heading = "\nTheory " + quote(thy) + " (in " + session_name + ")" + ":"

              read_theory(session_context.theory(thy), unicode_symbols = unicode_symbols) match {
                case None => progress.echo(thy_heading + " MISSING")
                case Some(snapshot) =>
                  val rendering = new Rendering(snapshot, options, session)
                  val messages =
                    rendering.text_messages(Text.Range.full)
                      .filter(message => verbose || Protocol.is_exported(message.info))
                  if (messages.nonEmpty) {
                    val line_document = Line.Document(snapshot.node.source)
                    val buffer = new mutable.ListBuffer[String]
                    for (Text.Info(range, elem) <- messages) {
                      val line = line_document.position(range.start).line1
                      val pos = Position.Line_File(line, snapshot.node_name.node)
                      def message_text: String =
                        Protocol.message_text(elem, heading = true, pos = pos,
                          margin = margin, breakgain = breakgain, metric = metric)
                      val ok =
                        check(message_head, Protocol.message_heading(elem, pos)) &&
                        check(message_body, XML.content(Pretty.unformatted(List(elem))))
                      if (ok) buffer += message_text
                    }
                    if (buffer.nonEmpty) {
                      progress.echo(thy_heading)
                      buffer.foreach(progress.echo)
                    }
                  }
              }
            }

            if (errors.nonEmpty) {
              val msg = Symbol.output(unicode_symbols, cat_lines(errors))
              progress.echo("\nBuild errors:\n" + Output.error_message_text(msg))
            }
            if (rc != Process_Result.RC.ok) {
              progress.echo("\n" + Process_Result.RC.print_long(rc))
            }
        }
      }
    }

    val errors = new mutable.ListBuffer[String]
    for (session_name <- sessions) {
      Exn.interruptible_capture(print(session_name)) match {
        case Exn.Res(_) =>
        case Exn.Exn(exn) => errors += Exn.message(exn)
      }
    }
    if (errors.nonEmpty) error(cat_lines(errors.toList))
  }


  /* Isabelle tool wrapper */

  val isabelle_tool = Isabelle_Tool("log", "print messages from build database",
    Scala_Project.here,
    { args =>
      /* arguments */

      var message_head = List.empty[Regex]
      var message_body = List.empty[Regex]
      var unicode_symbols = false
      var theories: List[String] = Nil
      var margin = Pretty.default_margin
      var options = Options.init()
      var verbose = false

      val getopts = Getopts("""
Usage: isabelle log [OPTIONS] [SESSIONS ...]

  Options are:
    -H REGEX     filter messages by matching against head
    -M REGEX     filter messages by matching against body
    -T NAME      restrict to given theories (multiple options possible)
    -U           output Unicode symbols
    -m MARGIN    margin for pretty printing (default: """ + margin + """)
    -o OPTION    override Isabelle system OPTION (via NAME=VAL or NAME)
    -v           print all messages, including information etc.

  Print messages from the build database of the given sessions, without any
  checks against current sources nor session structure: results from old
  sessions or failed builds can be printed as well.

  Multiple options -H and -M are conjunctive: all given patterns need to
  match. Patterns match any substring, but ^ or $ may be used to match the
  start or end explicitly.
""",
        "H:" -> (arg => message_head = message_head ::: List(arg.r)),
        "M:" -> (arg => message_body = message_body ::: List(arg.r)),
        "T:" -> (arg => theories = theories ::: List(arg)),
        "U" -> (_ => unicode_symbols = true),
        "m:" -> (arg => margin = Value.Double.parse(arg)),
        "o:" -> (arg => options = options + arg),
        "v" -> (_ => verbose = true))

      val sessions = getopts(args)

      val progress = new Console_Progress()

      if (sessions.isEmpty) progress.echo_warning("No sessions to print")
      else {
        print_log(options, sessions, theories = theories, message_head = message_head,
          message_body = message_body, verbose = verbose, margin = margin, progress = progress,
          unicode_symbols = unicode_symbols)
      }
    })
}