renamed Isar/isar_output.ML to Thy/thy_output.ML;
renamed Isar/term_style.ML to Thy/term_style.ML;
renamed Isar/thy_header.ML to Thy/thy_header.ML;
added Isar/spec_parse.ML;
added Thy/ml_context.ML;

--- a/src/Pure/IsaMakefile	Fri Jan 19 22:08:10 2007 +0100
+++ b/src/Pure/IsaMakefile	Fri Jan 19 22:08:11 2007 +0100
@@ -33,42 +33,43 @@
   General/xml.ML Isar/ROOT.ML Isar/antiquote.ML Isar/args.ML			\
   Isar/attrib.ML Isar/auto_bind.ML Isar/calculation.ML Isar/constdefs.ML	\
   Isar/context_rules.ML Isar/element.ML Isar/find_theorems.ML			\
-  Isar/induct_attrib.ML Isar/isar_cmd.ML Isar/isar_output.ML			\
+  Isar/induct_attrib.ML Isar/isar_cmd.ML 			\
   Isar/isar_syn.ML Isar/local_defs.ML Isar/local_syntax.ML			\
   Isar/local_theory.ML Isar/locale.ML Isar/method.ML Isar/net_rules.ML		\
   Isar/object_logic.ML Isar/obtain.ML Isar/outer_keyword.ML			\
   Isar/outer_lex.ML Isar/outer_parse.ML Isar/outer_syntax.ML			\
   Isar/proof.ML Isar/proof_context.ML Isar/proof_display.ML			\
   Isar/proof_history.ML Isar/rule_cases.ML Isar/rule_insts.ML			\
-  Isar/session.ML Isar/skip_proof.ML Isar/specification.ML			\
-  Isar/term_style.ML Isar/theory_target.ML Isar/thy_header.ML Isar/toplevel.ML	\
-  ML-Systems/polyml-4.1.4-patch.ML ML-Systems/polyml-4.2.0.ML			\
-  ML-Systems/polyml-5.0.ML ML-Systems/polyml-interrupt-timeout.ML		\
-  ML-Systems/polyml-posix.ML ML-Systems/polyml.ML ML-Systems/poplogml.ML	\
-  ML-Systems/smlnj.ML Proof/extraction.ML Proof/proof_rewrite_rules.ML		\
-  Proof/proof_syntax.ML Proof/proofchecker.ML Proof/reconstruct.ML Pure.thy	\
-  ROOT.ML ProofGeneral/parsing.ML ProofGeneral/pgip_input.ML			\
-  ProofGeneral/pgip_isabelle.ML ProofGeneral/pgip_markup.ML                     \
+  Isar/session.ML Isar/skip_proof.ML Isar/spec_parse.ML Isar/specification.ML	\
+  Isar/theory_target.ML Isar/toplevel.ML ML-Systems/polyml-4.1.4-patch.ML	\
+  ML-Systems/polyml-4.2.0.ML ML-Systems/polyml-5.0.ML 				\
+  ML-Systems/polyml-interrupt-timeout.ML ML-Systems/polyml-posix.ML 		\
+  ML-Systems/polyml.ML ML-Systems/poplogml.ML ML-Systems/smlnj.ML		\
+  Proof/extraction.ML Proof/proof_rewrite_rules.ML Proof/proof_syntax.ML	\
+  Proof/proofchecker.ML Proof/reconstruct.ML Pure.thy ROOT.ML 			\
+  ProofGeneral/parsing.ML ProofGeneral/pgip_input.ML 				\
+  ProofGeneral/pgip_isabelle.ML ProofGeneral/pgip_markup.ML			\
   ProofGeneral/pgip.ML ProofGeneral/pgip_output.ML ProofGeneral/pgip_tests.ML	\
   ProofGeneral/pgip_types.ML ProofGeneral/preferences.ML			\
   ProofGeneral/proof_general_pgip.ML ProofGeneral/proof_general_emacs.ML	\
   ProofGeneral/ROOT.ML Syntax/ROOT.ML Syntax/ast.ML Syntax/lexicon.ML 		\
   Syntax/mixfix.ML Syntax/parser.ML Syntax/printer.ML Syntax/syn_ext.ML		\
   Syntax/syn_trans.ML Syntax/syntax.ML Syntax/type_ext.ML Thy/html.ML		\
-  Thy/latex.ML Thy/present.ML Thy/thm_database.ML Thy/thm_deps.ML		\
-  Thy/thy_info.ML Thy/thy_load.ML Tools/ROOT.ML Tools/am_compiler.ML		\
+  Thy/latex.ML Thy/ml_context.ML Thy/present.ML Thy/term_style.ML		\
+  Thy/thm_database.ML Thy/thm_deps.ML Thy/thy_header.ML Thy/thy_info.ML		\
+  Thy/thy_load.ML Thy/thy_output.ML Tools/ROOT.ML Tools/am_compiler.ML		\
   Tools/am_interpreter.ML Tools/am_util.ML Tools/class_package.ML		\
   Tools/codegen_consts.ML Tools/codegen_data.ML Tools/codegen_func.ML		\
   Tools/codegen_funcgr.ML Tools/codegen_names.ML Tools/codegen_package.ML	\
   Tools/codegen_serializer.ML Tools/codegen_thingol.ML Tools/compute.ML		\
   Tools/invoke.ML Tools/nbe.ML Tools/nbe_codegen.ML Tools/nbe_eval.ML		\
   Tools/xml_syntax.ML assumption.ML axclass.ML codegen.ML compress.ML		\
-  conjunction.ML consts.ML context.ML defs.ML display.ML drule.ML		\
-  envir.ML fact_index.ML goal.ML install_pp.ML library.ML logic.ML		\
-  meta_simplifier.ML morphism.ML name.ML net.ML old_goals.ML pattern.ML		\
-  proofterm.ML pure_thy.ML search.ML sign.ML simplifier.ML sorts.ML subgoal.ML	\
-  tactic.ML tctical.ML term.ML term_subst.ML theory.ML thm.ML type.ML		\
-  type_infer.ML unify.ML variable.ML
+  conjunction.ML consts.ML context.ML defs.ML display.ML drule.ML envir.ML	\
+  fact_index.ML goal.ML install_pp.ML library.ML logic.ML meta_simplifier.ML 	\
+  morphism.ML name.ML net.ML old_goals.ML pattern.ML proofterm.ML pure_thy.ML	\
+  search.ML sign.ML simplifier.ML sorts.ML subgoal.ML tactic.ML tctical.ML 	\
+  term.ML term_subst.ML theory.ML thm.ML type.ML type_infer.ML unify.ML 	\
+  variable.ML
 	@./mk